القائمة
Recommend a batch-integration strategy and explain the tradeoffs for preserving biology versus removing technical effects.
التثبيت باستخدام Codex أو Claude انسخ هذا Prompt والصقه في Codex أو Claude أو مساعد آخر ليراجع صفحة Skill ويثبّتها لك.
استنادا إلى تصنيف SOC المهني
Manage the BioAPEX current-feature workflow from scoping through review and completion
Turn an analysis request into a Slurm-ready execution plan with commands, resource assumptions, and job structure.
Scale a buffer recipe to a target volume and compute component masses/volumes.
Save a fetched summary or document to the knowledge base for later retrieval (e.g. after PubMed/UniProt lookup).
Interpret scRNA clusters using marker genes and suggest cell type or state.
Critically evaluate a perturbation hypothesis — challenge assumptions, propose negative controls, and flag confounders.
| name | batch_integration_advisor |
| description | Recommend a batch-integration strategy and explain the tradeoffs for preserving biology versus removing technical effects. |
| category | bio/single_cell_rna |
| version | 1 |
| requires_tools | ["search_knowledge_base","python_repl"] |
| requires_network | false |
| user_invocable | true |
| tags | ["batch","integration","harmony","scanorama","seurat"] |
| aliases | ["integration_strategy_helper"] |
| species | any |
| modality | single_cell_rna |
| stage | preprocess |
| stability | stable |
| safety_level | low |
Help the user choose an integration strategy for single-cell datasets while preserving the biology they care about.
Use this skill when the user asks how to integrate batches, donors, or experiments, or whether they should integrate at all.
knowledge/batch-integration-playbook.md using search_knowledge_base.python_repl if it helps to structure options or decision criteria.