القائمة
Look up pathway or GO/Reactome/KEGG term definitions and key genes.
التثبيت باستخدام Codex أو Claude انسخ هذا Prompt والصقه في Codex أو Claude أو مساعد آخر ليراجع صفحة Skill ويثبّتها لك.
استنادا إلى تصنيف SOC المهني
Manage the BioAPEX current-feature workflow from scoping through review and completion
Turn an analysis request into a Slurm-ready execution plan with commands, resource assumptions, and job structure.
Scale a buffer recipe to a target volume and compute component masses/volumes.
Save a fetched summary or document to the knowledge base for later retrieval (e.g. after PubMed/UniProt lookup).
Interpret scRNA clusters using marker genes and suggest cell type or state.
Critically evaluate a perturbation hypothesis — challenge assumptions, propose negative controls, and flag confounders.
| name | pathway_lookup |
| description | Look up pathway or GO/Reactome/KEGG term definitions and key genes. |
| category | bio/literature |
| version | 1 |
| requires_tools | ["fetch_url","search_knowledge_base"] |
| requires_network | true |
| user_invocable | true |
| species | any |
| modality | literature |
| stage | utilities |
| stability | experimental |
| safety_level | low |
User asks what a pathway or GO/Reactome/KEGG term is, or which genes are in it.
Local first: Use search_knowledge_base with the term to find lab-curated definitions.
Online: Use fetch_url for public APIs:
https://reactome.org/ContentService/data/pathway/{id}/containedGenes or search.Synthesize: Definition of the pathway/term + list of key genes (if available) + optional link.