القائمة
Generate a 96- or 384-well plate map for perturbations and replicates.
التثبيت باستخدام Codex أو Claude انسخ هذا Prompt والصقه في Codex أو Claude أو مساعد آخر ليراجع صفحة Skill ويثبّتها لك.
استنادا إلى تصنيف SOC المهني
| name | plate_map_generator |
| description | Generate a 96- or 384-well plate map for perturbations and replicates. |
| category | bio/molecular_lab |
| version | 1 |
| requires_tools | ["python_repl","write_file"] |
| requires_network | false |
| user_invocable | true |
| species | any |
| modality | wet_lab |
| stage | design |
| stability | experimental |
| safety_level | low |
User needs a plate layout for experiments (e.g. perturbations, replicates, controls on 96/384 well plate).
Parse: Get plate size and list of conditions (with replicate counts if given).
Assign wells: Use python_repl to assign each condition to wells (A1–H12 for 96; extend for 384). If randomized, shuffle; if blocked, fill by row or column.
Output: Generate a text or CSV representation: well → condition. Optionally use write_file to save under knowledge/ (e.g. knowledge/plate_maps/plate_001.csv).
Present: Show the map (e.g. grid or table) and note where controls and replicates are.
Manage the BioAPEX current-feature workflow from scoping through review and completion
Turn an analysis request into a Slurm-ready execution plan with commands, resource assumptions, and job structure.
Scale a buffer recipe to a target volume and compute component masses/volumes.
Save a fetched summary or document to the knowledge base for later retrieval (e.g. after PubMed/UniProt lookup).
Interpret scRNA clusters using marker genes and suggest cell type or state.
Critically evaluate a perturbation hypothesis — challenge assumptions, propose negative controls, and flag confounders.
