القائمة
Generate an sbatch script template for GPU or CPU jobs (Slurm).
التثبيت باستخدام Codex أو Claude انسخ هذا Prompt والصقه في Codex أو Claude أو مساعد آخر ليراجع صفحة Skill ويثبّتها لك.
استنادا إلى تصنيف SOC المهني
Manage the BioAPEX current-feature workflow from scoping through review and completion
Turn an analysis request into a Slurm-ready execution plan with commands, resource assumptions, and job structure.
Scale a buffer recipe to a target volume and compute component masses/volumes.
Save a fetched summary or document to the knowledge base for later retrieval (e.g. after PubMed/UniProt lookup).
Interpret scRNA clusters using marker genes and suggest cell type or state.
Critically evaluate a perturbation hypothesis — challenge assumptions, propose negative controls, and flag confounders.
| name | slurm_job_template |
| description | Generate an sbatch script template for GPU or CPU jobs (Slurm). |
| category | bio/compute |
| version | 1 |
| requires_tools | ["python_repl","write_file"] |
| requires_network | false |
| user_invocable | true |
| species | any |
| modality | compute |
| stage | utilities |
| stability | experimental |
| safety_level | medium |
User needs a Slurm sbatch script for a compute job (e.g. Python, R, nextflow) with GPU or CPU.
Gather: Get job name, partition/qos if known, GPU count, CPU count, memory, time, and main command.
Template: Use python_repl to build sbatch lines:
Output: Print the full script. Optionally use write_file to save under knowledge/ or user-specified path if they ask.
Remind: Note that they should edit paths and commands before submitting.
