review-r

name	review-r
description	Run the R code review protocol on R scripts. Checks code quality, reproducibility, domain correctness, and professional standards. Produces a report without editing files.
disable-model-invocation	true
argument-hint	[filename or 'all']
allowed-tools	["Read","Grep","Glob","Write","Task"]

Review R Code

Run a comprehensive R code review on the specified script(s). Do NOT edit any R source files -- produce a report only.

Steps

1. Identify target: Use $ARGUMENTS to find the R file(s). If all, scan all .R files in scripts/ and project subdirectories.

2. Launch r-reviewer agent following the full protocol from .claude/agents/r-reviewer.md.

3. Read standards from .claude/rules/r-code-conventions.md.

4. Check 10 categories: Structure & Header, Console Output Hygiene, Reproducibility, Function Design, Domain Correctness, Figure Quality, RDS Data Pattern, Comment Quality, Error Handling, Professional Polish.

5. Save report to quality_reports/[script_name]_r_review.md.

6. Present summary: Total issues per script, severity breakdown (Critical/High/Medium/Low), top 3 critical issues.

Important

• NEVER edit source files. Report only.
• Prioritize correctness over style.