name	track-journals
description	Keep Bio-trend's journal feeds current — verify liveness, discover new biology sister journals, then poll and ingest.

track-journals

The watch loop for tracked biology journals. Run commands as PYTHONNOUSERSITE=1 ./env/bin/bio-trend ... from the repo root.

Verify feeds — bio-trend check-feeds --check. For each DEAD feed, try to find a working URL (the journal may have changed its RSS path); if found, update Journal-RSS.md + config/journals.json. If not, mark Status ✗ and note it.
Discover new biology sister journals (optional, periodic): for each family (Nature Portfolio, Science, Cell Press), check whether a notable biology journal is missing from config/journals.json. If so, follow the add-journal skill to register and verify its feed. Prefer biology-focused (bio_focus: high) titles.
Ingest — bio-trend ingest (all journals) or --journal <keys> for a subset. This is the step that captures the current rolling window; run it on a schedule so history accumulates.
Refresh derived outputs — bio-trend refresh --no-ingest (assign → trends → export-site) if you ingested separately, or just bio-trend refresh to do both.
Commit / PR — if Journal-RSS.md, config/, or docs/ changed, open a PR summarising new articles, journals added, and dead feeds.

Only liveness checks and new-journal discovery touch the network/web; ingestion, assignment, trends, and site export are deterministic CLI tools.
RSS is a rolling window — regular polling is what builds the month-over-month history that trends depend on. Don't expect back-history from a single run.

name	track-journals
description	Keep Bio-trend's journal feeds current — verify liveness, discover new biology sister journals, then poll and ingest.

The watch loop for tracked biology journals. Run commands as PYTHONNOUSERSITE=1 ./env/bin/bio-trend ... from the repo root.

Verify feeds — bio-trend check-feeds --check. For each DEAD feed, try to find a working URL (the journal may have changed its RSS path); if found, update Journal-RSS.md + config/journals.json. If not, mark Status ✗ and note it.
Discover new biology sister journals (optional, periodic): for each family (Nature Portfolio, Science, Cell Press), check whether a notable biology journal is missing from config/journals.json. If so, follow the add-journal skill to register and verify its feed. Prefer biology-focused (bio_focus: high) titles.
Ingest — bio-trend ingest (all journals) or --journal <keys> for a subset. This is the step that captures the current rolling window; run it on a schedule so history accumulates.
Refresh derived outputs — bio-trend refresh --no-ingest (assign → trends → export-site) if you ingested separately, or just bio-trend refresh to do both.
Commit / PR — if Journal-RSS.md, config/, or docs/ changed, open a PR summarising new articles, journals added, and dead feeds.

Only liveness checks and new-journal discovery touch the network/web; ingestion, assignment, trends, and site export are deterministic CLI tools.
RSS is a rolling window — regular polling is what builds the month-over-month history that trends depend on. Don't expect back-history from a single run.

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