| name | benchos-protparam |
| description | Calculate protein parameters such as molecular weight, pI, extinction coefficient, and basic purification recommendations. Use when the user asks about protein properties or planning purification from sequence. |
| license | Proprietary |
| compatibility | Requires BenchOS agent runtime with `labbook_cli`, `benchos-cli`, and the curated `python-basic` capability pack. |
| metadata | {"author":"benchos","version":"1"} |
| allowed-tools | labbook_cli |
BenchOS ProtParam
Use this skill when the user wants protein biophysical parameters from an amino acid sequence.
Quick Rules
- Install
python-basic before running the script.
- Accept amino acid sequences only.
- Use
--purification when the user also wants a simple purification plan.
Command Patterns
Basic analysis
{"args":["capabilities","install","--name","python-basic"]}
{"args":["exec","--capability","python-basic","--cwd",".","--","/opt/benchos/shared-skills/benchos-protparam/scripts/protparam_cli.py","--sequence","MKTAYIAKQRQISFVKSHFSRQDILD","--json"]}
Include purification recommendations
{"args":["exec","--capability","python-basic","--cwd",".","--","/opt/benchos/shared-skills/benchos-protparam/scripts/protparam_cli.py","--sequence","MKTAYIAKQRQISFVKSHFSRQDILD","--purification","--json"]}
