benchos-reactor

name	benchos-reactor
description	Calculate reaction buffer recipes while accounting for protein stock-buffer contributions. Use when the user asks for reaction setup volumes, compensation buffers, or multi-component biochemistry recipes.
license	Proprietary
compatibility	Requires BenchOS agent runtime with `labbook_cli`, `benchos-cli`, and the curated `python-basic` capability pack.
metadata	{"author":"benchos","version":"1"}
allowed-tools	labbook_cli

BenchOS Reactor

Use this skill when the user needs a reaction or assembly recipe and the stock buffers contribute meaningful amounts of the final components.

Quick Rules

• Install python-basic before running the script.
• Use --protein-preset and --buffer-preset when the built-in presets fit.
• Use direct --protein and --buffer definitions when the user gives exact concentrations.

Command Patterns

Preset-based calculation

{"args":["capabilities","install","--name","python-basic"]}

{"args":["exec","--capability","python-basic","--cwd",".","--","/opt/benchos/shared-skills/benchos-reactor/scripts/reactor_cli.py","--protein-preset","kinase_panel","--buffer-preset","kinase_assay","--volume","100","--json"]}

Direct specification

{"args":["exec","--capability","python-basic","--cwd",".","--","/opt/benchos/shared-skills/benchos-reactor/scripts/reactor_cli.py","--protein","CDK2:50nM:stock=10uM:buffer=HEPES/20mM,NaCl/150mM","--buffer","HEPES:1M->25mM","--buffer","NaCl:5M->100mM","--volume","100","--json"]}