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Debug Airflow DAGs locally using dag.test() in an IDE or command line with pdb. Use when debugging DAG execution, task failures, import errors, or testing DAGs without deploying to Airflow.

Comprehensive guide for testing Apache Airflow DAGs including unit tests, integration tests, load tests, mocking, and best practices for Airflow 3 repositories.

Workflow and best practices for writing Apache Airflow 3 DAGs. Use when the user wants to write a new DAG, pipeline code, or asks about DAG patterns and conventions.

Guide for analyzing pipeline output and debugging Nextflow workflows. Use this when you need to inspect channel contents, trace process execution, or analyze intermediate files.

Research and recommend the best bioinformatics tool for a specific task. Use this when you need to select appropriate tools for bioinformatics analysis based on requirements, performance, integration, and community support.

Guide for interacting with nf-core modules and subworkflows. Use this when you need to discover, view, install, or update nf-core modules/subworkflows in your pipeline.

Guide for creating Mermaid diagrams (.mmd files) from Nextflow pipeline code. Use this when asked to create workflow diagrams from subworkflows or main.nf scripts.