القائمة
Run terminal gxwf validation on an assembled Galaxy workflow and classify workflow-level failures.
التثبيت باستخدام Codex أو Claude انسخ هذا Prompt والصقه في Codex أو Claude أو مساعد آخر ليراجع صفحة Skill ويثبّتها لك.
استنادا إلى تصنيف SOC المهني
Carry an existing Galaxy workflow's tests forward as a regression baseline and augment them for a change-set's deltas, emitting a Galaxy test plan.
Triage failing Galaxy run outputs; classify the failure surface and capture evidence before recommending repairs.
Synthesize a Galaxy workflow test plan from a free-form summary and the Galaxy design briefs.
Assemble Galaxy workflow test fixtures and assertions.
Execute a workflow's tests via Planemo; emit structured pass/fail and outputs.
Convert one nf-core module dir into a Galaxy tool wrapper (tool.xml + macros.xml + _provenance.yml + remote-URL <test> blocks).
| name | validate-galaxy-workflow |
| description | Run terminal gxwf validation on an assembled Galaxy workflow and classify workflow-level failures. |
Follow the procedure below and use the artifact/reference sections as the runtime contract.
gxwf (gxwf). npm install -g @galaxy-tool-util/cli@^1.8.1.
Ephemeral run: npx --yes --package @galaxy-tool-util/cli@1.8.1 gxwf.
Check: gxwf --help | grep -q draft-validate.
Docs: https://github.com/jmchilton/galaxy-tool-util-ts/tree/main/packages/clireferences/cli/validate.json: CLI command reference packaged as a sidecar. Validate the assembled gxformat2 workflow before runtime testing. Use when: after all Galaxy steps and workflow tests have been assembled.references/notes/galaxy-workflow-invocation-failure-reference.md: Research note copied verbatim into the bundle. Keep static workflow validation findings distinct from Galaxy invocation/runtime failure surfaces. Use when: a workflow passes gxwf validation but still has likely runtime risks around invocation scheduling, outputs, conditionals, or collection population.references/notes/galaxy-workflow-testability-design.md: Research note copied verbatim into the bundle. Classify validation or pre-test findings that indicate missing labels, omitted workflow outputs, or untestable checkpoint structure. Use when: terminal validation passes but workflow-level outputs, labels, or collection shapes look likely to break future workflow tests.Validate the assembled Galaxy workflow before runtime testing. The skill owns the terminal validation pass: run gxwf validate, classify workflow-level diagnostics, and route failures back to the responsible authoring phase when possible.
This is separate from advance-galaxy-draft-step (which runs gxwf draft-validate --concrete inside the per-step loop) because terminal validation no longer has only one fresh step in scope and should reason over cross-step workflow structure.