simple-main-motion

name	simple-main-motion
description	Use when working in SIMPLE's src/main/motion subsystem, including hybrid global/local motion correction, patched alignment, iterative correction, nano-specific motion paths, and helper utilities for movie alignment workflows.

SIMPLE src/main/motion

This folder owns movie motion correction.

Read First

• doc/algorithms/motion_correction.md
• simple_motion_correct.f90
• simple_motion_correct_iter.f90
• simple_motion_align_hybrid.f90
• simple_motion_patched.f90
• simple_motion_correct_utils.f90

Connections

• Commonly interacts with image/, ctf/, project/, stream/, and preprocessing commanders/strategies

Working Rule

Keep the global-alignment stage, patch-alignment stage, and deformation-model policy conceptually separate.