القائمة
Wrapper that runs the four per-ontology generation skills in sequence on a single ontology directory — README, citings, internal mermaid, external mermaid. Use this for the
التثبيت باستخدام Codex أو Claude انسخ هذا Prompt والصقه في Codex أو Claude أو مساعد آخر ليراجع صفحة Skill ويثبّتها لك.
Given two existing functors going in opposite directions between two ontologies, scaffold an Adjunction impl with unit/counit and the gap-analysis test suite. Used after functor-author for both directions, when the goal is to detect missing distinctions between scales.
Given two pr4xis ontologies, scaffold a Functor impl that maps the source ontology's entities to the target's, with map_morphism and the check_functor_laws test. Produces a draft for human review — the user fills in the cases the skill can't infer with confidence.
The full ontology authoring workflow as a single skill. Take a topic or source paper, research it, extract concepts/relations/axioms, scaffold the ontology with define_ontology!, scaffold candidate functors and adjunctions to existing related ontologies, run the laws check, run gap analysis, and report. Produces a draft for human review — does not auto-commit.
Generate a citings.md file for one pr4xis ontology directory by extracting source-paper citation comments from the surrounding code. Produces a structured bibliography with full citations, DOIs/URLs, and one-line annotations of which axioms each source grounds. Where the code references a paper without a full bibliography entry, scaffold a placeholder for human filling.
Generate a mermaid diagram showing one pr4xis ontology's external connections — the functors and adjunctions that link it to other ontologies in the workspace. Inserts the diagram into the per-ontology README between auto-generated markers.
Generate a mermaid diagram showing the internal structure of one pr4xis ontology — its concepts (entities) as nodes and its relationships (morphisms) as edges, with arrow styles distinguishing taxonomy / mereology / causation / opposition. Inserts the diagram into the per-ontology README between auto-generated markers.
استنادا إلى تصنيف SOC المهني
| name | per-ontology-rollout |
| description | Wrapper that runs the four per-ontology generation skills in sequence on a single ontology directory — README, citings, internal mermaid, external mermaid. Use this for the |
Wrapper skill that runs the full per-ontology generation pack on one ontology directory. Composes four sibling skills.
When you want to bring a single ontology directory to the #57/#59 standard (README + citings + two mermaid diagrams) in one shot. For batch processing all 106 ontologies, invoke this wrapper repeatedly with different paths.
crates/domains/src/--overwrite flag to overwrite existing files (default: refuse and ask per skill)In order, with each step's failure halting the rest:
Validate the input: confirm the directory exists, contains ontology.rs, and the file has a define_ontology! block. If not, stop with an error.
Invoke per-ontology-readme to generate the README skeleton. This produces the file with the structural sections; the mermaid diagrams will be added by steps 4 and 5.
Invoke per-ontology-citings to extract citation comments from the code and produce citings.md next to the README.
Invoke per-ontology-mermaid-internal to generate the internal-structure diagram and insert it into the README between auto-generated markers.
Invoke per-ontology-mermaid-external to generate the cross-ontology connections diagram and insert it into the same README.
Relocate cited PDFs into <ontology-dir>/papers/. For each primary source in the newly generated citings.md that resolves to a PDF in docs/papers/, git mv the PDF into <ontology-dir>/papers/ (create the directory if needed) and update the citings.md link to papers/<filename>.pdf. If the same PDF is cited by multiple ontologies, leave it in docs/papers/ and link across — do not duplicate.
Run cargo test -p pr4xis-domains <ontology-name> to confirm the new files (which are markdown, not Rust) haven't somehow disturbed any build script or test runner.
A consolidated summary from all four sub-skills:
--overwrite is set)crates/domains/src/natural/biomedical/ contains many child ontologies): only operate on the directory passed in. Recursing is the caller's job, not this skill's.This wrapper exists for ergonomics — running four skills with one command. It does not add logic beyond sequencing. If you need finer control (e.g., regenerate only the diagrams), invoke the individual sibling skills directly.