literature-review

name	literature-review
description	Provenance-backed literature review. Searches PubMed / Europe PMC / arXiv (connectors/literature.py), dedupes, synthesizes by theme, and attaches a DOI/PMID to every conclusion. Use when you need a literature review, evidence for a claim, or a related-work section.

literature-review

Steps

1. Ensure an active run (python scripts/provenance.py status).
2. Search (write results into runs/<run>/outputs/):

   python connectors/literature.py pubmed   "<query>" --n 20 --out runs/<run>/outputs/pubmed.json
   python connectors/literature.py europepmc "<query>" --n 20 --out runs/<run>/outputs/epmc.json
   python connectors/literature.py arxiv     "<query>" --n 20 --out runs/<run>/outputs/arxiv.json
   

3. For Chinese sources / cross-database needs, use the global academic-literature-search skill (CNKI + OpenAlex/S2/CrossRef).
4. Dedupe (by DOI/title), cluster by theme, write the review to runs/<run>/outputs/literature.md, with an identifier after every conclusion.

Hard rules

• Never fabricate citations; each must map to a real DOI/PMID/arXiv id (the reviewer checks).
• Record queries, hit counts, and dedup rules in outputs for reproducibility.