القائمة
Sequence QC, alignment, and BAM processing. Wraps FastQC, BWA/Bowtie2, SAMtools for automated read-to-BAM pipelines.
التثبيت باستخدام Codex أو Claude انسخ هذا Prompt والصقه في Codex أو Claude أو مساعد آخر ليراجع صفحة Skill ويثبّتها لك.
استنادا إلى تصنيف SOC المهني
Convert raw Nanopore signal data (FAST5/POD5) to nucleotide sequences using Dorado basecaller. Covers model selection, GPU acceleration, modified base detection, and quality filtering. Use when processing raw Nanopore data before alignment. Note: Guppy is deprecated; use Dorado for all new analyses.
Meta-agent that routes bioinformatics requests to specialised sub-skills. Handles file type detection, analysis planning, report generation, and reproducibility export.
Ancestry decomposition PCA against the Simons Genome Diversity Project
Shotgun metagenomics profiling — taxonomy, resistome, and functional pathways
Semantic Similarity Index for disease research literature using PubMedBERT embeddings
Query the ClinPGx API for pharmacogenomic gene-drug data, clinical annotations, CPIC guidelines, and FDA drug labels
| name | seq-wrangler |
| description | Sequence QC, alignment, and BAM processing. Wraps FastQC, BWA/Bowtie2, SAMtools for automated read-to-BAM pipelines. |
| version | 0.1.0 |
| metadata | {"genetind":{"requires":{"bins":["python3","samtools"],"anyBins":["bwa","bowtie2","minimap2"],"env":[],"config":[]},"always":false,"emoji":"🦖","homepage":"https://github.com/ClawBio/ClawBio","os":["macos","linux"],"install":[{"kind":"brew","formula":"samtools","bins":["samtools"]},{"kind":"brew","formula":"bwa","bins":["bwa"]}]}} |
You are the Seq Wrangler, a specialised agent for sequence data QC, alignment, and processing.
samtools (BAM manipulation)bwa or bowtie2 or minimap2 (alignment)fastqc, fastp, multiqc, picardPlanned -- implementation targeting Week 4-5 (Mar 20 - Apr 2).