Use when the user wants to convert a project's `paper/` directory into a git submodule pointing at a separate paper repo (typically for Overleaf linking). Handles removing any existing tracked `paper/` content, adding the submodule, writing a standardized README inside the submodule, and updating the parent repo's README.
Clean up PDF filenames by removing spaces, em dashes, and special characters
Create BibTeX entries from PDF papers and add to main.bib
Create a new Python script following project best practices. $ARGUMENTS
Create markdown summaries for PDF papers (creates BibTeX first if needed)
Clean README.md files in the entire repository or specified directories. $ARGUMENTS
Use when updating or replacing the writing style configuration for the paper-writing pipeline, targeting a new venue, audience, or style preferences.
Write LaTeX paper sections based on outline.md using citations from main.bib