pantree

Install, validate, repair, or explain the Pantree development and runtime environment. Use for uv setup, Python compatibility, dependency problems, package installation, or initial command and test validation.

Run, debug, or explain Pantree analyses, CLI commands, Python APIs, scientific concepts, and GFA/VCF contracts. Use for gfa2vcf conversion, graph simplification, haplotype consolidation, reference-tree behavior, genotype interpretation, or Pantree file formats.