API documentation to be loaded at startup - when starting a Coot session, immediately call get_function_descriptions() with the functions listed in this skill.
Best Practices for using Coot MCP
Using Density-Fit Correlations in Coot
Best Practices for Model-Building Tools and Refinement
Best practices for protein structure refinement and validation in Coot. Use when performing (1) Residue refinement operations, (2) Model building and fitting, (3) Rotamer fixing, (4) Scripted/automated refinement workflows, (5) Validation and correlation checking.
Comprehensive structure validation combining model-to-map analysis and unmodeled density detection
Best practices for creating publication-quality molecular graphics figures in Coot using user-defined colors, ribbons, and molecular representations
Query the PDBe (Protein Data Bank in Europe) REST API and Solr search API from within Coot to access structure metadata, validation data, revision history, search capabilities, and download coordinate files