القائمة
Initialize a MATLAB session for atom probe analysis. Run this at the start of every APT session to set up the toolbox, load isotope tables, and load the default color scheme.
التثبيت باستخدام Codex أو Claude انسخ هذا Prompt والصقه في Codex أو Claude أو مساعد آخر ليراجع صفحة Skill ويثبّتها لك.
استنادا إلى تصنيف SOC المهني
| name | apt-setup |
| description | Initialize a MATLAB session for atom probe analysis. Run this at the start of every APT session to set up the toolbox, load isotope tables, and load the default color scheme. |
| argument-hint | [instrument] |
Initialize the MATLAB session for atom probe analysis. Use the MATLAB MCP server to execute the following setup code:
setupToolbox;
load('isotopeTable_naturalAbundances.mat');
load('colorScheme_default.mat');
cfg = APTConfig.getInstance();
If the user provided an instrument name as $ARGUMENTS, also apply the instrument preset. Map common names to preset names:
cfg.applyInstrumentPreset('LEAP4000XHR')cfg.applyInstrumentPreset('LEAP5000XR')cfg.applyInstrumentPreset('LEAP5000XS')cfg.applyInstrumentPreset('EIKOS')If no instrument is provided, ask the user which instrument their data was acquired on.
After setup, display the current configuration:
cfg.display();
Report back to the user what was initialized and the active instrument settings (detection efficiency, flight path, t0).
Voronoi-cell cluster determination (Felfer et al. 2015) — detect and extract clusters via Voronoi-cell volumes, Delaunay triangulation, and a Kolmogorov-Smirnov test against a randomised reference. Use when the user wants the Voronoi/clusterDetermination method specifically (this is NOT DBSCAN — for density-based DBSCAN use /apt-cluster instead).
Create a new ion color scheme or add ions/colors to the existing one. Produces/updates the `colorScheme` workspace variable used by ranging and 3D visualization everywhere else. Use when the user wants custom ion colors, a new color scheme, or to add a missing ion color.
Per-vertex concentration mapping onto a mesh/interface — compute atom-to-mesh distances, clip a slab around the interface, voxelise by nearest vertex, and apply a concentration kernel to colour each vertex. Use when the user wants a concentration map painted onto an isosurface or modelled grain boundary mesh.
Run quality-control checks on an atom probe dataset before analysis — basic stats, voltage curve, detector hit map (FDM), mass spectrum sanity, coordinate ranges, multi-hit fraction, and automated quality metrics. Use when the user wants to assess data quality or sanity-check a reconstruction.
Create a field desorption map (detector hit-density / concentration image) and optionally a movie of detector activity over the course of the experiment. Use when the user wants an FDM, desorption map, detector image, or to watch features evolve during the measurement.
Quantify interfacial excess (Gibbsian excess of solute, in at/nm^2) across an interface — either a single value via the Krakauer-Seidman integral method, or a 2D excess map over the surface. Use when the user wants the amount of an element segregated to an interface or grain boundary.