| name | repodb-query |
| description | Query the RepoDB drug repurposing database. Use whenever the user asks about drug-disease associations, drug repurposing candidates, or wants to look up any entity (drug name, indication, DrugBank ID, UMLS CUI, NCT ID) in RepoDB.
|
RepoDB Query Skill
Search RepoDB records by any entity. Auto-detects type by prefix:
| Input Pattern | Detected As | Match Logic |
|---|
DB00584 | DrugBank ID | exact on drugbank_id |
C0020538 | UMLS CUI | exact on ind_id |
NCT00001234 | Trial ID | exact on NCT |
| anything else | free text | substring on drug_name OR ind_name |
API
| Function | Input | Returns |
|---|
load_repodb(path) | CSV path | DataFrame |
search(df, entity) | single entity string | DataFrame |
search_batch(df, entities) | list of entity strings | dict[str, DataFrame] |
summarize(hits, entity) | DataFrame + label | compact text |
to_json(hits) | DataFrame | list[dict] |
Usage
See if __name__ == "__main__" block in repodb_query.py for runnable examples covering: drug name, DrugBank ID, UMLS CUI, indication name, batch search, and JSON output.
Data
- Source:
full.csv (comma or tab separated, auto-detected)
- Columns:
drug_name, drugbank_id, ind_name, ind_id, NCT, status, phase, DetailedStatus
- Path:
DATA_PATH variable in repodb_query.py
