realmarcin

Generate publication-quality plots from data files or DataFrames

Analyzes a GitHub repository or local directory to extract structure, files, and research context

Assembles all manuscript sections into a complete manuscript with validation and metadata generation

Analyzes manuscript outline for journal suitability, recommends optimal journal, and fetches author guidelines

Performs adversarial critique of manuscripts, outlines, literature reviews, or other academic content against journal requirements and quality standards.

Analyzes the repository structure and generates a detailed manuscript outline based on target journal guidelines (Nature, PLOS, Bioinformatics).

Performs deep literature research on manuscript topics and generates a comprehensive one-page summary of background and related work with citations.

Use for complete end-to-end manuscript generation. Orchestrates all steps from repository analysis to final manuscript with validation gates, two-stage review, citation verification, and automated revision.

Unified intelligent query interface for the CDM DuckDB database. Use this skill when the user wants to query the linkml-coral CDM database. Automatically chooses between fast SQL translation and schema-aware intelligent queries based on complexity. Supports natural language questions, schema exploration, and data analysis.

Query the CDM DuckDB database using natural language. Use this skill when the user wants to query the linkml-coral CDM database with questions in plain English instead of writing SQL. The skill translates natural language to SQL using Claude API and returns formatted results.

Query the CDM DuckDB database using LinkML schema awareness. Use this skill when the user wants to query the database with understanding of the data model, relationships, and semantics defined in the LinkML schema. This provides richer, more intelligent queries than basic SQL.