SpatialAI_MCP

Diagnose a failing Nextflow pipeline run in an OpenProblems benchmark. Use when a `nextflow run` fails, a process errors out, or the user shares a .nextflow.log / .command.err and asks why it broke.

Prepare a spatial transcriptomics method for contribution to an OpenProblems benchmark (e.g. task_ist_preprocessing). Use when the user wants to submit/contribute a method, open a PR to a task_* repo, or check submission readiness.

Validate and inspect spatial transcriptomics data files (SpatialData/zarr/AnnData) before any analysis. Use when the user points at a spatial data file, reports a loading/format error, or asks whether data is suitable for a method.

Author or modify a Viash component (config.vsh.yaml + script) for an OpenProblems method, especially a task_ist_preprocessing stage. Use when the user wants to add/implement a spatial method, scaffold a component, or fix a config.vsh.yaml.