القائمة
Call SNVs and indels from aligned BAMs using GATK HaplotypeCaller or DeepVariant with optional GVCF output for joint genotyping.
التثبيت باستخدام Codex أو Claude انسخ هذا Prompt والصقه في Codex أو Claude أو مساعد آخر ليراجع صفحة Skill ويثبّتها لك.
استنادا إلى تصنيف SOC المهني
Decision-grade enzyme/protein mutation design for thermostability with bioactivity-preserving constraints enforced by default, plus structure-aware and consensus-ranking workflows.
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Cluster samples or features using k-means or hierarchical clustering, evaluate cluster quality with silhouette scores, and produce a dendrogram or cluster plot.
Compare a continuous variable between two groups with automatic selection of t-test, Welch test, or Mann-Whitney U test based on data properties.
| name | genome-variant-calling |
| description | Call SNVs and indels from aligned BAMs using GATK HaplotypeCaller or DeepVariant with optional GVCF output for joint genotyping. |
.bam + .bai)..fai index and .dict sequence dictionary.gatk or deepvariant (default: gatk).gatk HaplotypeCaller with --emit-ref-confidence GVCF (if GVCF mode) or standard VCF output.WGS or WES).bcftools index or gatk IndexFeatureFile..vcf.gz)..vcf.gz.tbi)..dict or .fai index files.