composable-daa

Diagnose microbiome/virome count data and recommend differential abundance analysis methods. Use when user wants to analyze their data, asks which method to use for their specific dataset, or provides count data files for analysis.

Guide for differential abundance analysis method selection, threshold choices, and result interpretation. Use when user asks about LinDA, ZINB, Hurdle, NB methods, q-value thresholds, effect sizes, sensitivity, FDR, or how to interpret DAA results. Also use when user runs an analysis and gets unexpected results (like 0 significant features).

Interpret differential abundance analysis results. Use when user has DAA output and wants to understand significant features, effect sizes, confidence levels, or next steps.