clinpub-modify

name	clinpub-modify
description	Modify completed analysis outputs. Clarifies modification scope (figure style, statistical method, variables), executes changes, verifies outputs, and records history in PLAN.md. Can be invoked from any phase. Triggers: modify figures, change analysis method, adjust chart style, replace variables.

ClinPub Modify

Modify completed Phase 2 analysis outputs. Support two categories:

1. Style modifications: color, font, chart type, layout adjustments (re-render figures)
2. Method modifications: statistical test change, variable replacement, parameter adjustment, new method addition (re-run analysis)

Execution Context

• Workflow: pipeline/workflows/modify.md
• References: pipeline/references/analysis_methods.md, r_patterns.md
• Agent: agents/modify-agent.md

Process

Execute the modification workflow from pipeline/workflows/modify.md end-to-end.

Success Criteria

• Modification scope defined and user-confirmed
• All modifications executed and verified
• Modified figures meet publication standards (>=300 DPI, English labels)
• Statistical reports include effect size + 95%CI + exact p-value
• Modification history appended to PLAN.md
• User informed about manuscript update requirement