القائمة
Summarize all MCP tools, capabilities, and usage examples for this project
التثبيت باستخدام Codex أو Claude انسخ هذا Prompt والصقه في Codex أو Claude أو مساعد آخر ليراجع صفحة Skill ويثبّتها لك.
استنادا إلى تصنيف SOC المهني
Full clinical variant workup — gnomAD population frequency, ClinVar significance, protein domain impact, AlphaFold structure context, and PubMed literature
Compare a gene across multiple species — find orthologs, retrieve sequences, compute alignments, and summarize conservation
Druggability assessment — protein function, 3D structures, ligand-bound PDBs, binding sites, interaction network, disease associations, and literature
Functional analysis of a gene list — batch summaries, pathway mapping, protein interactions, tissue expression, and phenotype associations
Generate a comprehensive gene report by combining data from NCBI, Ensembl, UniProt, ClinVar, PDB, InterPro, STRING, and KEGG
Research session lab notebook — start, annotate, update, report, or check status
| name | project-summary |
| description | Summarize all MCP tools, capabilities, and usage examples for this project |
Read the file PROJECT_INVENTORY.md from the project root and present a formatted summary including:
datasets_summary_gene with symbol BRCA1 and taxon humansequence_align with two protein sequencesensembl_lookup_gene with symbol TP53uniprot_search for BRCA1 in humanclinvar_search for pathogenic BRCA1 variantspdb_search for TP53 structuresstring_get_interactions for TP53blast_search with a protein sequencepubmed_search for CRISPR gene therapy papersalphafold_get_prediction for P04637/project-summary, /gene-report <gene> (comprehensive multi-database gene report), /variant-report <target> (variant annotation report), /protein-report <protein> (protein-centric report with structure, PTMs, interactions, expression), /pathway-report <pathway> (pathway deep-dive with Reactome data, member genes, clinical variants, literature), /drug-target-report <target> (druggability assessment with structures, binding sites, disease rationale, COSMIC mutations), and /lab-notebook <subcommand> (research session lab notebook — start, annotate, update, report, status)
/literature-agent <topic> (PubMed literature search and summary), /comparative-genomics-agent <gene> <species...> (multi-species gene comparison with alignments), /clinical-variant-agent <variant> (full variant workup), /gene-list-agent <genes> (functional analysis of a gene list), /structure-agent <target> (structural biology deep-dive with all PDB structures, AlphaFold, variant mapping), /statistical-methods-agent <paper> (paper statistical analysis — fetches full text, inventories every statistical method, critiques assumptions and appropriateness)Keep the output concise and well-formatted with markdown.