deepmapper

Run a DeepMapper analysis with Claude. Use this when the user wants to analyse a single-cell RNA-seq or other high-dimensional omics matrix WITHOUT dimension reduction, find the genes that separate a cell state (including distributed "gene chords" that only matter in combination), attribute a classifier back to named features, compare against a linear baseline, or reproduce one of the example analyses. Triggers on "analyse this with DeepMapper", "find gene chords", "which genes separate these states", "no-filtering / keep every feature", "attribute back to genes", or "reproduce a DeepMapper analysis figure".