nf-iac-plugin

name	nf-iac-plugin
description	Configure and operate the `nf-iac` Nextflow plugin using bundled references in this skill package. Use for `iac.conf`/`*.config`, run script updates, CPU/GPU profile selection, and debugging from `.nextflow.log` and `.nextflow/iac/*` artifacts.

NF IAC Plugin

Scope

Use this skill for:

• Plugin usage and configuration decisions.
• Drafting/updating iac and aws config blocks.
• Adapting run scripts for object-storage work dirs.
• Runtime triage with task/job artifacts and .nextflow.log.

This skill is designed to be self-contained. Prefer bundled references under references/ even when repository docs are missing.

Optional Repository Discovery

If the target repo also has local templates, discover and use them as secondary input:

1. Look for (if present):

• README.md or public/nf-iac-plugin/README.md
• manual/
• test/
• existing run/config files (run*.sh, iac.conf, *.config)

2. Use local files to adapt examples; keep bundled references as baseline truth.

Workflow

1. Read bundled references in this order:

• references/usage.md
• references/debug.md
• references/files.md
• references/nf-iac-plugin-public-readme.md
• references/nf-iac-plugin-manual.md
• references/nf-iac-plugin-user-manual.md

2. If local templates exist, align edits to their style and naming.
3. Apply changes in usage assets only unless explicitly asked to change source:

• iac.conf, *.config, run*.sh, user docs.

4. For debugging tasks, always inspect:

• .nextflow.log
• .nextflow/iac/<run_timestamp>/
• .nextflow/iac/<run_timestamp>/<task_id>/

5. Keep object-store guidance rclone-based and current:

• config path /etc/rclone/rclone.conf
• remote path style bucket:bucket/path

References

• references/files.md
• references/usage.md
• references/debug.md
• references/nf-iac-plugin-readme.md
• references/nf-iac-plugin-public-readme.md
• references/nf-iac-plugin-manual.md
• references/nf-iac-plugin-user-manual.md