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Workflow orchestration guidance — plan mode etiquette, subagent discipline, session hygiene, and git commit conventions. Use when asked about plan mode, how to structure multi-step work, when to use subagents, or when making a git commit.
Install with Codex or Claude Copy this prompt, paste it into Codex, Claude, or another assistant, and let it review the skill page and install it for you.
Based on SOC occupation classification
Acid Genomics R package development conventions — per-project air.toml, global ~/.lintr only, roxygen2 8.x @importFrom split, S4 linter tuning, AcidDevTools::check() gate. Use when writing or checking an acidgenomics R package, configuring air/lintr, or fixing roxygen/lint failures.
Diagnose and recover from common git branch/state accidents — wrong-branch reset, git alias side effects, untracked-file checkout collisions, and stash cleanup. Use when a git command moved the wrong branch pointer, a checkout was blocked by untracked files, or stash noise is showing in the prompt.
Guide for maintaining and optimizing Claude Code configuration — CLAUDE.md, rules files, hooks, and skills. Use when auditing instruction bloat, deciding where a new rule belongs, or pruning stale content.
Org-mode todo.org conventions for project task tracking. Use when the user pastes a `** TODO` heading, asks about project TODOs or plans, or when deciding where to track tasks or mark work complete.
Claude Code permission system internals — protected paths, permission modes, allow/ask/deny rule precedence, and the PreToolUse permissionDecision hook contract. Use when debugging unexpected permission prompts, understanding why Edit(.claude/**) or Bash(*) allow rules have no effect on .claude/ writes, or reasoning about acceptEdits vs plan vs bypassPermissions mode tradeoffs.
Rewrite git history safely with git filter-repo. Use when removing secrets or sensitive files from commits, rewriting author/committer emails across history, de-duplicating doubled commits, or any commit-level surgery.
| name | workflow-guidance |
| description | Workflow orchestration guidance — plan mode etiquette, subagent discipline, session hygiene, and git commit conventions. Use when asked about plan mode, how to structure multi-step work, when to use subagents, or when making a git commit. |
A conversation, not a race. Start by understanding the problem — ask questions, challenge assumptions. Don't call ExitPlanMode until explicitly given the green light. Enter plan mode for architectural decisions or non-obvious tradeoffs.
.claude/rules/lessons.md
(project-level only; ~/.claude/rules/lessons.md is user-curated).Save to .claude/plans/. Use system-assigned filenames as-is.
Plan → verify → track → explain → capture lessons.
Subject ≤72 chars; body explains why. Never "update", "fix bug", "WIP", "changes".
No Co-Authored-By: trailers — commits are authored solely by the user.