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bioclaw-hub-trajectory-lineage

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UpdatedJuly 6, 2026 at 12:06

Pseudotime, lineage branching, and state-transition analysis for single-cell data with coherent embeddings and annotations.

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ai4nucleome

ai4nucleome/BioMaster

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Software DevelopersComputer and Mathematical Occupations·SOC 15-1252

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SKILL.md

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name	bioclaw-hub-trajectory-lineage
description	Pseudotime, lineage branching, and state-transition analysis for single-cell data with coherent embeddings and annotations.
domain	single-cell
primary_tool	scanpy
methods	["scanpy","scvelo","matplotlib"]
macro_tags	["workflow","trajectory","lineage","pseudotime","branching"]
micro_tags	["scanpy","scvelo","matplotlib","topology-check","diffusion-map","neighborhood-graph","root-selection","branch-definition","marker-based-root","pseudotime","dpt","rna-velocity","trajectory-inference","dynamic-genes","branch-markers","differential-expression","pseudotime-genes","visualization","trajectory-overlay","pseudotime-heatmap","branch-visualization"]
source	bioclaw-hub-trajectory-lineage
status	active
enabled	true

Bioclaw Hub Trajectory Lineage

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name	bioclaw-hub-trajectory-lineage
description	Pseudotime, lineage branching, and state-transition analysis for single-cell data with coherent embeddings and annotations.
domain	single-cell
primary_tool	scanpy
methods	["scanpy","scvelo","matplotlib"]
macro_tags	["workflow","trajectory","lineage","pseudotime","branching"]
micro_tags	["scanpy","scvelo","matplotlib","topology-check","diffusion-map","neighborhood-graph","root-selection","branch-definition","marker-based-root","pseudotime","dpt","rna-velocity","trajectory-inference","dynamic-genes","branch-markers","differential-expression","pseudotime-genes","visualization","trajectory-overlay","pseudotime-heatmap","branch-visualization"]
source	bioclaw-hub-trajectory-lineage
status	active
enabled	true