bioskills-cell-segmentation

name	bioskills-cell-segmentation
description	Segment cells from IMC images using Cellpose/Mesmer/steinbock and extract per-cell expression data with spatial coordinates.
domain	single-cell
primary_tool	cellpose
methods	["cellpose","deepcell","mesmer","steinbock","skimage","anndata","scanpy"]
macro_tags	["segmentation","imc","single-cell-extraction","cellpose","spatial"]
micro_tags	["cellpose","deepcell","mesmer","steinbock","regionprops","intensity-extraction","morphology","qc","visualization","anndata","tiff","csv","nuclei-expansion"]
source	bioskills-cell-segmentation
status	active
enabled	true

Bioskills Cell Segmentation