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bioskills-coexpression-networks

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UpdatedJuly 6, 2026 at 12:06

Build weighted gene co-expression networks (WGCNA) to detect co-regulated gene modules, correlate them with sample traits, and identify hub genes; includes CEMiTool, hdWGCNA (single-cell), and PyWGCNA alternatives.

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ai4nucleome

ai4nucleome/BioMaster

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Biological Scientists, All OtherLife, Physical, and Social Science Occupations·SOC 19-1029

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SKILL.md

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name	bioskills-coexpression-networks
description	Build weighted gene co-expression networks (WGCNA) to detect co-regulated gene modules, correlate them with sample traits, and identify hub genes; includes CEMiTool, hdWGCNA (single-cell), and PyWGCNA alternatives.
domain	single-cell
primary_tool	WGCNA
methods	["WGCNA","CEMiTool","hdWGCNA","PyWGCNA"]
macro_tags	["co-expression","wgcna","module-detection","hub-genes","network","trait-correlation"]
micro_tags	["WGCNA","CEMiTool","hdWGCNA","PyWGCNA","blockwiseModules","pickSoftThreshold","soft-thresholding","module-detection","eigengenes","trait-correlation","hub-genes","module-membership","gene-significance","connectivity","cytoscape","metacells","single-cell"]
source	bioskills-coexpression-networks
status	active
enabled	true

Bioskills Coexpression Networks

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name	bioskills-coexpression-networks
description	Build weighted gene co-expression networks (WGCNA) to detect co-regulated gene modules, correlate them with sample traits, and identify hub genes; includes CEMiTool, hdWGCNA (single-cell), and PyWGCNA alternatives.
domain	single-cell
primary_tool	WGCNA
methods	["WGCNA","CEMiTool","hdWGCNA","PyWGCNA"]
macro_tags	["co-expression","wgcna","module-detection","hub-genes","network","trait-correlation"]
micro_tags	["WGCNA","CEMiTool","hdWGCNA","PyWGCNA","blockwiseModules","pickSoftThreshold","soft-thresholding","module-detection","eigengenes","trait-correlation","hub-genes","module-membership","gene-significance","connectivity","cytoscape","metacells","single-cell"]
source	bioskills-coexpression-networks
status	active
enabled	true