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Read, write, create, merge, and convert single-cell data objects (AnnData/Scanpy and Seurat) for downstream analysis.
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Based on SOC occupation classification
Load BioMaster as one integrated skill-driven bioinformatics assistant.
BioMaster conversational bioinformatics assistant; starts workflows only after execution intent or empty activation.
Automated and marker-guided single-cell cell type annotation using CellTypist, marker review, reference transfer, and confidence-aware label curation.
Ligand-receptor communication inference in single-cell or spatial data with sender-receiver summaries and cautious interpretation.
Workflow for paired or integrated single-cell RNA and ATAC analysis with multimodal latent spaces and regulatory interpretation.
Workflow for spatial transcriptomics preprocessing, domain detection, deconvolution, neighborhood analysis, and publication-ready spatial maps.
| name | bioskills-data-io |
| description | Read, write, create, merge, and convert single-cell data objects (AnnData/Scanpy and Seurat) for downstream analysis. |
| domain | single-cell |
| primary_tool | scanpy |
| methods | ["scanpy","anndata","seurat","seuratdisk"] |
| macro_tags | ["data-io","single-cell","anndata","seurat","format-conversion"] |
| micro_tags | ["read-10x","h5ad","rds","csv","loom","metadata","subsetting","merge","seuratdisk","h5seurat"] |
| source | bioskills-data-io |
| status | active |
| enabled | true |
