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bioskills-grn-pipeline

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UpdatedJuly 6, 2026 at 12:06

Infer gene regulatory networks from single-cell data (pySCENIC for RNA-only, SCENIC+ for Multiome) and simulate TF perturbations with CellOracle.

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ai4nucleome

ai4nucleome/BioMaster

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name	bioskills-grn-pipeline
description	Infer gene regulatory networks from single-cell data (pySCENIC for RNA-only, SCENIC+ for Multiome) and simulate TF perturbations with CellOracle.
domain	single-cell
primary_tool	pySCENIC
methods	["pySCENIC","GRNBoost2","RcisTarget","AUCell","SCENIC+","cisTopic","pycistarget","CellOracle"]
macro_tags	["gene-regulatory-network","regulon","perturbation-simulation","multiome","motif-enrichment"]
micro_tags	["pySCENIC","GRNBoost2","RcisTarget","AUCell","SCENIC+","cisTopic","pycistarget","CellOracle","data-loading","path-selection","version-check","grnboost2","cistopic","grn-inference","rcistarget","motif-enrichment","regulon-pruning","aucell","scenicplus","egrn","qc","validation","celloracle","perturbation-simulation","knn-imputation"]
source	bioskills-grn-pipeline
status	active
enabled	true

Bioskills Grn Pipeline

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name	bioskills-grn-pipeline
description	Infer gene regulatory networks from single-cell data (pySCENIC for RNA-only, SCENIC+ for Multiome) and simulate TF perturbations with CellOracle.
domain	single-cell
primary_tool	pySCENIC
methods	["pySCENIC","GRNBoost2","RcisTarget","AUCell","SCENIC+","cisTopic","pycistarget","CellOracle"]
macro_tags	["gene-regulatory-network","regulon","perturbation-simulation","multiome","motif-enrichment"]
micro_tags	["pySCENIC","GRNBoost2","RcisTarget","AUCell","SCENIC+","cisTopic","pycistarget","CellOracle","data-loading","path-selection","version-check","grnboost2","cistopic","grn-inference","rcistarget","motif-enrichment","regulon-pruning","aucell","scenicplus","egrn","qc","validation","celloracle","perturbation-simulation","knn-imputation"]
source	bioskills-grn-pipeline
status	active
enabled	true