Menu
Manage the BioAPEX current-feature workflow from scoping through review and completion
Install with Codex or Claude Copy this prompt, paste it into Codex, Claude, or another assistant, and let it review the skill page and install it for you.
Based on SOC occupation classification
Turn an analysis request into a Slurm-ready execution plan with commands, resource assumptions, and job structure.
Scale a buffer recipe to a target volume and compute component masses/volumes.
Save a fetched summary or document to the knowledge base for later retrieval (e.g. after PubMed/UniProt lookup).
Interpret scRNA clusters using marker genes and suggest cell type or state.
Critically evaluate a perturbation hypothesis — challenge assumptions, propose negative controls, and flag confounders.
Explain where project data and outputs live (e.g. GPFS, data/, predictions/) from knowledge base.
| name | feature |
| description | Manage the BioAPEX current-feature workflow from scoping through review and completion |
| argument-hint | load|start|review|explain|test|complete |
Manages the BioAPEX feature lifecycle using the current feature file as the working contract.
@context/current-feature.md
current-feature.md has these sections:
# Current Feature - keep this heading as-is## Status - must be exactly one of: Not Started | In Progress | Completed## Goals - direct, implementation-oriented goals with enough detail to build without guessing## Notes - structure, constraints, file paths, assumptions, and decisions that matter during implementation## History - concise completed work entries, appended over timeExecute the requested action: $ARGUMENTS
| Action | Description |
|---|---|
load | Load a feature spec or inline description |
start | Begin implementation and set the feature in motion |
review | Run the BioAPEX-specific review flow |
explain | Document what changed and why |
test | Run the relevant verification flow for this repo |
complete | Finalize the feature state and prepare it for commit/merge |
See actions/ for detailed instructions.
If no action provided, explain the available options.