proteomics-reporting

name	proteomics-reporting
version	0.1.0
description	LLM prompt templates for generating final analysis reports. Produces a concise Markdown report covering executive summary, recommended configuration rationale, key findings, and caveats.

Proteomics Reporting Prompts

Prompt templates for LLM-driven report generation after optimization completes.

System Prompt

Write a concise Markdown analysis report for a proteomics DEA optimization.
Include: executive summary, recommended configuration rationale, key findings,
and caveats. Keep it under 500 words.

User Prompt

## Data Profile
{data_profile_json}

## All Results (sorted by score)
{all_results_table}

## Recommended Configuration
{best_config}