brycewang-stanford/Auto-Empirical-Research-Skills - Page 19

enrichr-api

Perform gene set enrichment analysis using the Enrichr API

ensembl-rest-api

Query gene, sequence, and variant data via the Ensembl REST API

epidemiology-guide

Epidemiological study designs, measures of association, and public health ana...

genomas-guide

Automate gene expression analysis with the GenoMAS multi-agent system

genomics-analysis-guide

Workflows for RNA-seq, GWAS, and variant calling in genomic research

genotex-benchmark-guide

Benchmark for LLM agents on gene expression data analysis

med-researcher-guide

Multi-agent system for biomedical literature review and synthesis

med-researcher-r1-guide

Medical deep research agent with reasoning chain analysis

medgeclaw-guide

AI research assistant for biomedicine, RNA-seq, and drug discovery

medical-data-api

Access FDA drug data and WHO global health statistics for research

medical-imaging-guide

Medical image analysis with deep learning for research applications

ncbi-blast-api

Run sequence similarity searches via the NCBI BLAST REST API

ncbi-datasets-api

Access genomes, genes, and taxonomy data via NCBI Datasets v2 API

pdb-structure-api

Search and retrieve 3D protein structures from the RCSB Protein Data Bank

quickgo-api

Browse and search Gene Ontology annotations via the QuickGO API

biomedical-skills

24 biomedical research skills. Trigger: medical research, clinical trials, genomics, bioinformatics. Design: domain databases, wet-lab/dry-lab methods, and ethical compliance guides.

architecture-design-guide

Design principles of form, function, sustainability in architecture

innovation-management-guide

Innovation metrics, R&D management research, and technology forecasting

market-analysis-guide

Structured frameworks for market sizing, competitive analysis, and strategic ...

operations-research-guide

Optimization and operations research methods for business and logistics

business-skills

5 business research skills. Trigger: business strategy, market analysis, competitive intelligence. Design: analytical frameworks and methods for management and innovation research.

strategic-management-guide

Frameworks for strategic planning, resource allocation, and organizational an...

cactus-cheminformatics-guide

PNNL cheminformatics LLM agent for molecular analysis

catalysis-hub-api

Query computational catalysis reaction data via Catalysis Hub GraphQL

chemeagle-guide

Multi-agent system for chemical literature information extraction

chemgraph-agent-guide

Automate molecular simulations with the ChemGraph agentic framework

computational-chemistry-guide

DFT, molecular simulation, and reaction prediction tools for chemists

molecular-dynamics-guide

Molecular dynamics simulation setup, execution, and trajectory analysis

pubchem-api-guide

Search PubChem for chemical compounds, structures, and bioassay data

retrosynthesis-guide

Retrosynthetic analysis and computational reaction prediction

chemistry-skills

9 chemistry skills. Trigger: chemical structure analysis, reaction prediction, molecular modeling. Design: computational chemistry tools and cheminformatics workflows.

spectroscopy-analysis-guide

Spectral data analysis for NMR, IR, mass spectrometry, and UV-Vis

ai-security-papers-guide

AI security papers from top-4 security conferences

algorithms-complexity-guide

Analyze algorithm complexity and computational efficiency for research

code-llm-papers-guide

Survey and paper collection on LLMs for code generation

dblp-api

Search computer science publications, authors, and venues via DBLP

distributed-systems-guide

Distributed systems design patterns and analysis for CS research

formal-verification-guide

Formal methods, theorem proving, and model checking for CS research

gaussian-splatting-papers-guide

Curated papers and resources for 3D Gaussian Splatting

llm-aiops-guide

Papers on LLMs for IT operations and AIOps research