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missense-kinase-toolkit-specific Python style; extends my central `formatting` skill. Use whenever writing or editing any Python code in this repo.
Install with Codex or Claude Copy this prompt, paste it into Codex, Claude, or another assistant, and let it review the skill page and install it for you.
Based on SOC occupation classification
missense-kinase-toolkit Sphinx docs; extends my central `docs` skill. Use when adding/removing public API, fixing docstrings, or regenerating the docs/generated stubs (then rebuild with make clean && make html).
missense-kinase-toolkit-specific git conventions; extends my central `git` skill. Use when creating commits, branches, or pull requests.
missense-kinase-toolkit-specific testing conventions; extends my central `tests` skill. Use when adding or running tests, or debugging test failures.
How the Streamlit app and the reusable mkt.databases.app package fit together (SequenceAlignment, StructureConfig/Visualizer, PropertyTables) and the schema → databases → app dependency chain. Use when editing the Streamlit app or the mkt.databases.app modules, or wiring visualization logic between them.
How to add or modify a database/API client in mkt.databases (the APIClient hierarchy in api_schema.py, query datetime + cache provenance stamping, requests caching, token handling). Use when integrating a new data source (REST/Swagger/GraphQL) or editing an existing client like cbioportal, oncokb, uniprot, chembl, open_targets, hgnc, pfam, ncbi, protvar, cancer_hotspots.
missense-kinase-toolkit-specific CI/CD layout; extends my central `ci` skill. Use when editing .github/workflows, adding a sub-package, changing the test env, or debugging CI failures.
| name | formatting |
| description | missense-kinase-toolkit-specific Python style; extends my central `formatting` skill. Use whenever writing or editing any Python code in this repo. |
Apply my canonical formatting conventions (imports, NumPy-style docstrings,
trailing-docstring constants, lowercase comments, double quotes) before the
repo-specific notes below. WebFetch and follow:
https://raw.githubusercontent.com/jessicaw9910/skills/main/.claude/skills/formatting/SKILL.md
If the fetch fails (no network / non-200), tell me the central formatting
skill could not be retrieved and confirm how to proceed — do not silently skip
the baseline.
mkt.schema.*, mkt.databases.*, mkt.ml.*.black, isort profile "black", flake8
max-line-length 88 ignoring E203/E501, pyupgrade --py39-plus), scoped to
^missense_kinase_toolkit and excluding KinaseInfo/. Run
pre-commit run --all-files before committing.mkt.databases.klifs — match that style.