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Run the main.r pipeline and verify all outputs exist with non-zero size. Use to check that the full analysis reproduces correctly.
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Based on SOC occupation classification
| name | run-pipeline |
| description | Run the main.r pipeline and verify all outputs exist with non-zero size. Use to check that the full analysis reproduces correctly. |
| disable-model-invocation | true |
| argument-hint | [optional: specific script to run] |
Run the project's R pipeline and verify outputs.
Identify what to run:
$ARGUMENTS specifies a script: run that script onlycode/main.r (the full pipeline)Execute the pipeline:
Rscript code/main.r
Or for a specific script:
Rscript code/$ARGUMENTS
Verify outputs exist:
outputs/tables/ for expected table files (CSV, tex)outputs/figures/ for expected figure files (PNG, PDF)temp_data/ for intermediate datasetsReport results:
If the pipeline fails:
Build the T32 grant proposal as PDF and/or Word. Supports full build, Word-only, PDF-only, or single-section Word export for collaborator review.
Full grant review pipeline — runs compliance checker, study section reviewer, and proofreader on the T32 proposal. Aggregates all results into a single summary report.
Compile the LaTeX manuscript. Runs latexmk (or multi-pass pdflatex + biber) from the project root and reports errors, warnings, and undefined references.
Challenge academic content with 5-7 specific pedagogical questions. Checks ordering, prerequisites, gaps, alternatives, notation conflicts, cognitive load, and standalone readiness. Works on slides, lecture notes, paper drafts, and assignments.
Run holistic pedagogical review on teaching materials — slides, lecture notes, assignments, or syllabi. Checks narrative arc, prerequisites, worked examples, notation clarity, and pacing.
Run the proofreading protocol on project files. Checks grammar, typos, overflow, consistency, and academic writing quality. Produces a report without editing files.