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Run shared nf-core lint and policy checks via `prek run <hook-id>` or full `prek run --all-files` in this repo.
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Run and interpret `nf-core pipelines lint` to validate a Nextflow pipeline against nf-core community guidelines. Use when the user wants to check pipeline compliance, fix lint failures, run specific lint tests, or configure `.nf-core.yml` lint overrides.
Create, lint, and modify nf-core pipelines following community standards. Use when the user is working on a Nextflow pipeline that lives under nf-core, mentions `nf-core create`, `nf-core lint`, or edits files like `main.nf`, `nextflow.config`, `nextflow_schema.json`, or anything under `conf/`, `workflows/`, or `subworkflows/local/` inside an nf-core pipeline.
| name | nf-core-tools |
| description | Run shared nf-core lint and policy checks via `prek run <hook-id>` or full `prek run --all-files` in this repo. |
| license | MIT |
| metadata | {"author":"nf-core","version":"0.1.0"} |
prek run --all-files
prek run guard-nfcore-modules --all-files
prek run lint-schema --all-files
prek run check-param-drift --all-files
prek run lint-local-module --all-files
prek run check-nftest-exists --all-files
prek run check-changelog --all-files
lint-schema and lint-local-module require nf-core CLI installed.