| name | benchos-servalcat |
| description | Servalcat workflow guidance for reciprocal-space cryo-EM refinement and Fo-Fc map calculation. Use when the user asks about half-map refinement, omit maps, weighted difference maps, or reciprocal-space validation strategy. |
| license | Proprietary |
| compatibility | Guidance skill only. BenchOS does not currently ship Servalcat or CCP4 inside the agent runtime. |
| metadata | {"author":"benchos","version":"1"} |
| allowed-tools | labbook_cli |
BenchOS Servalcat
Use this skill for Servalcat workflow guidance, especially when the user needs reciprocal-space refinement or Fo-Fc map strategy.
Core Rules
- Prefer Servalcat when the user explicitly needs weighted Fo-Fc maps or reciprocal-space refinement against half-maps.
- Emphasize correct half-map inputs: unsharpened, unweighted maps.
- Treat omit-map generation as a deliberate workflow with a refined starting model.
BenchOS Workflow
- Confirm the map, half-map, and model inputs.
- Decide whether the user needs refinement, Fo-Fc maps, or an omit-map workflow.
- Explain the correct Servalcat stage and expected outputs.
- Persist resulting outputs into BenchOS after they are generated externally.
