agentme-edr-skill-005-create-python-project

name	agentme-edr-skill-005-create-python-project
description	Scaffolds the initial boilerplate structure for a Python project following the standard tooling and layout defined in agentme-edr-014. Activate this skill when the user asks to create, scaffold, or initialize a new Python package, CLI, or similar project structure.
metadata	{"author":"flaviostutz","version":"1.0"}
compatibility	Python 3.12+

Overview

Creates a complete Python project from scratch using Mise, uv, pyproject.toml, Ruff, Pyright, Pytest, and Makefiles. The layout keeps the package self-contained under lib/, organizes internal code following agentme-edr-021 (adapters/, app/, shared/), uses a shared root .venv/, redirects persistent caches into .cache/, and places runnable consumer projects under the sibling examples/ folder.

Related EDRs: agentme-edr-014, agentme-edr-016, agentme-edr-021

Instructions

Phase 1: Gather information

Ask for or infer from context:

• Package name - Python distribution/import name, e.g. my_tool
• Short description - one sentence
• Author name or GitHub username
• Python version - default 3.13
• Primary entry point - first module or command name to scaffold
• GitHub repo URL - optional, for project metadata
• Confirm target directory - default: current workspace root

Phase 2: Create root files

Create these files first.

./.mise.toml

[tools]
python = "3.13"
uv = "latest"

Replace 3.13 with the chosen Python version and pin any additional project CLIs used by the project here.

./Makefile

SHELL := /bin/bash
MISE := mise exec --
ROOT_DIR := $(abspath .)
export UV_PROJECT_ENVIRONMENT := $(ROOT_DIR)/.venv
export UV_CACHE_DIR := $(ROOT_DIR)/.cache/uv

all: build lint test

setup:
	mise install
	$(MAKE) install

install:
	$(MAKE) -C lib install

build:
	$(MAKE) -C lib build

lint:
	$(MAKE) -C lib lint

lint-fix:
	$(MAKE) -C lib lint-fix

test: test-unit test-examples

test-unit:
	$(MAKE) -C lib test-unit

test-examples: build
	@for dir in examples/*; do \
		if [ -f "$$dir/pyproject.toml" ]; then \
			echo ">>> Running $$dir"; \
			UV_PROJECT_ENVIRONMENT="$(UV_PROJECT_ENVIRONMENT)" UV_CACHE_DIR="$(UV_CACHE_DIR)" $(MISE) uv sync --project "$$dir" --frozen || exit 1; \
			UV_PROJECT_ENVIRONMENT="$(UV_PROJECT_ENVIRONMENT)" UV_CACHE_DIR="$(UV_CACHE_DIR)" $(MISE) uv pip install --python "$(UV_PROJECT_ENVIRONMENT)/bin/python" lib/dist/*.whl || exit 1; \
			UV_PROJECT_ENVIRONMENT="$(UV_PROJECT_ENVIRONMENT)" UV_CACHE_DIR="$(UV_CACHE_DIR)" $(MISE) uv run --project "$$dir" python main.py || exit 1; \
		fi; \
	done

clean:
	$(MAKE) -C lib clean
	rm -rf .cache
	rm -rf .venv

The root Makefile keeps the repository clean by delegating package work to lib/ and treating each example directory as an independent consumer project. Child Makefiles own the actual mise exec -- <tool> calls.

./.gitignore

.venv/
dist/
.cache/
__pycache__/

./README.md

Keep this README focused on the repository or workspace. Put Getting Started near the top.

# [package-name]

[description]

## Getting Started

```sh
make setup
make test
```

The published package lives in `lib/` and runnable consumer examples live in `examples/`.

Phase 3: Create lib/

lib/ contains everything the library needs: source, tests, package metadata, lockfile, build artifacts, and library-specific Makefile targets.

lib/Makefile

SHELL := /bin/bash
MISE := mise exec --
ROOT_DIR := $(abspath ..)
export UV_PROJECT_ENVIRONMENT := $(ROOT_DIR)/.venv
export UV_CACHE_DIR := $(ROOT_DIR)/.cache/uv
export RUFF_CACHE_DIR := $(abspath .cache/ruff)
export PYTHONPYCACHEPREFIX := $(abspath .cache/pycache)
export COVERAGE_FILE := $(abspath .cache/coverage)

PACKAGE_NAME ?= your_package

all: build lint test-unit

install:
	$(MISE) uv sync --project . --frozen --all-extras --dev

build: install
	rm -rf dist
	$(MISE) uv build --project . --out-dir dist

lint: install
	$(MISE) uv run --project . ruff format --check .
	$(MISE) uv run --project . ruff check .
	$(MISE) uv run --project . pyright
	$(MISE) uv run --project . pip-audit

lint-fix: install
	$(MISE) uv run --project . ruff format .
	$(MISE) uv run --project . ruff check . --fix
	$(MISE) uv run --project . pyright
	$(MISE) uv run --project . pip-audit

test-unit: install
	$(MISE) uv run --project . pytest -o cache_dir=.cache/pytest --cov=src/$(PACKAGE_NAME) --cov-branch --cov-report=term-missing --cov-report=html:.cache/htmlcov --cov-fail-under=80

run: install
	$(MISE) uv run --project . python -m $(PACKAGE_NAME)

dev: run

update-lockfile:
	$(MISE) uv lock --project . --upgrade

clean:
	rm -rf dist .cache

lib/pyproject.toml

Replace placeholders such as [package-name], [description], [author], and [python-version].

[project]
name = "[package-name]"
version = "0.0.1"
description = "[description]"
readme = "README.md"
requires-python = ">=[python-version]"
dependencies = []

[[project.authors]]
name = "[author]"

[project.optional-dependencies]
dev = []

[dependency-groups]
dev = [
  "pip-audit>=2.9.0",
  "pyright>=1.1.400",
  "pytest>=8.4.0",
  "pytest-cov>=6.1.0",
  "ruff>=0.11.0",
]

[build-system]
requires = ["hatchling>=1.27.0"]
build-backend = "hatchling.build"

[tool.ruff]
cache-dir = ".cache/ruff"
output-format = "grouped"
line-length = 120
target-version = "py313"
src = ["src", "tests", "tests_integration"]

[tool.ruff.format]
docstring-code-format = true
line-ending = "lf"

[tool.ruff.lint]
task-tags = ["TODO"]
select = ["ERA", "FAST", "ANN", "ASYNC", "S", "BLE", "FBT", "B", "A", "COM",
  "C4", "DTZ", "T10", "DJ", "EM", "EXE", "FIX", "INT", "ISC", "ICN", "LOG", "G",
  "INP", "PIE", "T20", "PYI", "PT", "Q", "RSE", "RET", "SLF", "SIM", "SLOT", "TID",
  "TC", "ARG", "PTH", "FLY", "I", "C90", "NPY", "PD", "N", "PERF", "E", "W",
  "D", "F", "PGH", "PL", "UP", "FURB", "RUF", "TRY"]
ignore = ["ANN002", "ANN003", "ANN401", "D100", "D101", "D102", "D103", "D104",
  "D105", "D106", "D107", "COM812", "D203", "D213", "D400", "D401", "D404", "D415", "FIX002"]

[tool.ruff.lint.pycodestyle]
ignore-overlong-task-comments = true

[tool.pyright]
include = ["src", "tests"]
venvPath = ".."
venv = ".venv"
typeCheckingMode = "standard"

[tool.pytest.ini_options]
testpaths = ["tests"]
addopts = "-q"

Use lib/pyproject.toml as the single configuration file for the package. Do not add requirements.txt, setup.py, setup.cfg, ruff.toml, or pyrightconfig.json by default.

lib/README.md

This README is the published package README referenced by lib/pyproject.toml.

# [package-name]

[description]

## Getting Started

```sh
make setup
make test
```

```python
from [package-name] import hello

print(hello("world"))
```

## Development

```sh
make build
make lint
make test
```

Phase 4: Create the package and tests inside lib/

Create this baseline structure following agentme-edr-021.

lib/src/[package_name]/__init__.py

from .app.hello import hello

__all__ = ["hello"]

lib/src/[package_name]/app/__init__.py

lib/src/[package_name]/app/hello.py

def hello(name: str) -> str:
    return f"Hello, {name}!"

lib/src/[package_name]/adapters/__init__.py

lib/src/[package_name]/adapters/cli/__init__.py

from [package_name].app.hello import hello


def main() -> None:
    print(hello("world"))


if __name__ == "__main__":
    main()

lib/src/[package_name]/shared/__init__.py

Create empty adapters/connectors/ directory with a .gitkeep for outbound adapters.

lib/tests/test_hello.py

from [package_name].app.hello import hello


def test_hello() -> None:
    assert hello("world") == "Hello, world!"

If two or more test files need shared fixtures, create lib/tests/conftest.py and move shared setup there.

If the module needs slower end-to-end coverage, place those tests in lib/tests_integration/. Put dedicated benchmark harnesses in lib/tests_benchmark/.

Phase 5: Create examples

Add an examples/ directory with one subdirectory per runnable consumer example. Each example must be its own Python project.

examples/basic-usage/pyproject.toml

[project]
name = "basic-usage"
version = "0.0.0"
requires-python = ">=[python-version]"
dependencies = []

The root test-examples target installs the wheel built into lib/dist/ before running each example. Do not point examples back to ../../lib or lib/src/.

examples/basic-usage/main.py

from [package_name] import hello


print(hello("world"))

Examples must import the package as a consumer would. Avoid relative imports back into lib/src/.

Phase 6: Verify

After creating the files:

1. Run make setup.
2. Run make install.
3. Run make lint-fix.
4. Run make test.
5. Run make build.
6. Fix all failures before finishing.

Examples

Input: "Create a Python project called event_tools"

• Create Makefile, README.md, lib/pyproject.toml, lib/Makefile, lib/src/event_tools/, lib/tests/, and examples/
• Scaffold adapters/, app/, shared/ directories inside lib/src/event_tools/
• Add lib/README.md, .cache/ handling, and install examples from the built wheel in lib/dist/
• Configure uv, Ruff, Pyright, Pytest, pytest-cov, and pip-audit
• Verify with make lint-fix, make test, and make build

Input: "Scaffold a Python CLI package"

• Add CLI entry point in lib/src/<package_name>/adapters/cli/__init__.py
• Add [project.scripts] in lib/pyproject.toml when the command name must differ from the module name
• Keep the same Makefile and quality checks

Edge Cases

• Pin Python and uv in the root .mise.toml; do not assume host-installed tools.
• If the project is fewer than 100 lines and explicitly marked as a spike or experiment, examples and linting may be skipped only when another applicable XDR allows it.
• If an example needs extra dependencies, keep them in that example's pyproject.toml; do not move them into lib/pyproject.toml unless the library truly needs them.
• If the user asks for an app with framework-specific needs such as FastAPI or Django, keep this baseline and add the framework config on top instead of replacing it.

References

• agentme-edr-014
• _core-adr-003 - Skill standards