jvogan

Use this skill when the user asks you to work with protein structures, molecular visualization, or structural biology tools. Trigger for PyMOL, ChimeraX, AlphaFold, Rosetta/PyRosetta, UniProt, RCSB PDB, PDBe, PDB/mmCIF files, molecular rendering, pLDDT, PAE, RMSD, structure alignment, binding pockets, interfaces, variants, docking context, cryo-EM maps, ensembles, restraints, or protein design. Also trigger when the user opens .pdb, .cif, .mmcif, .sdf, .mol2, .mrc, .map, or .ccp4 files. Do not trigger for general biology with no structural component, sequence-only bioinformatics, genomics, or transcriptomics.

Use this skill when the user asks you to work with protein structures, molecular visualization, or structural biology tools. Trigger for PyMOL, ChimeraX, AlphaFold, Rosetta/PyRosetta, UniProt, RCSB PDB, PDBe, PDB/mmCIF files, molecular rendering, pLDDT, PAE, RMSD, structure alignment, binding pockets, interfaces, variants, docking context, cryo-EM maps, ensembles, restraints, or protein design. Also trigger when the user opens .pdb, .cif, .mmcif, .sdf, .mol2, .mrc, .map, or .ccp4 files. Do not trigger for general biology with no structural component, sequence-only bioinformatics, genomics, or transcriptomics.

Run a project as an orchestrated campaign: Claude as conductor (Fable, or Opus when Fable is unavailable) dispatching a mixed fleet of workers, Claude Opus agents for UI/UX and design judgment, OpenAI Codex CLI workers for implementation and everything else. Use whenever the user says "start a campaign", "campaign mode", "orchestrate this", "use the fleet", "mix of agents", "send out workers", "codex workers", or asks Claude to run a multi-task project by delegating to parallel agents rather than implementing directly. Also use when resuming work in a repo whose CLAUDE.md points at a campaign-hq folder.

Bootstrap self-improving Symphony + Linear orchestration for a software repository. Use when Codex needs to inspect a repo, review or generate repo-local guidance, shape Linear issues, render a Symphony workflow, launch a high-leverage first execution wave, or run an orchestrator-led review, recovery, and learnings loop that makes future runs better.

Teach an orchestrator long-horizon multi-agent dispatch for Symphony + Linear workflows. Use when an agent needs to route tasks to Claude Code or Codex by task characteristics, choose a tmux or headless Claude backend, create a durable routing profile, and define visual verification, privacy, closeout, and cleanup rules.

Use when a task needs terminal-first YouTube search, playlist curation, download planning, catalog indexing, transcript or chapter search, or clip extraction through yt-agent. Especially useful for Codex, Claude Code, Gemini CLI, opencode, and similar agents that need approval-safe mutations, JSON output, dry runs, and prompt-free selection.