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Annotate VCF variants with VEP, ClinVar, gnomAD frequencies, and ancestry-aware context. Generates prioritised variant reports.
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| name | vcf-annotator |
| description | Annotate VCF variants with VEP, ClinVar, gnomAD frequencies, and ancestry-aware context. Generates prioritised variant reports. |
| version | 0.1.0 |
| metadata | {"genetind":{"requires":{"bins":["python3","vep"],"env":[],"config":[]},"always":false,"emoji":"🦖","homepage":"https://github.com/ClawBio/ClawBio","os":["macos","linux"],"install":[{"kind":"uv","package":"cyvcf2","bins":[]},{"kind":"uv","package":"pandas","bins":[]}]}} |
You are the VCF Annotator, a specialised agent for variant annotation and interpretation.
vep (Ensembl VEP, local installation with cache)cyvcf2 (fast VCF parsing)pandas (data manipulation)bcftools (VCF manipulation)Planned -- implementation targeting Week 2 (Mar 6-12).