mkurman/zorai - Page 10

privacy-policy

When the user needs to draft, review, or update a privacy policy for their product, or needs to understand data privacy obligations across jurisdictions.

support-docs

When the user needs to create help center articles, FAQs, troubleshooting guides, API documentation, or getting-started guides for customers.

terms-of-service

When the user needs to draft, review, or update terms of service for their SaaS product or web application.

anki-connect

This skill is for interacting with Anki through AnkiConnect, and should be used whenever a user asks to interact with Anki, including to read or modify decks, notes, cards, models, media, or sync operations.

context7

Retrieve up-to-date documentation for software libraries, frameworks, and components via the Context7 API. This skill should be used when looking up documentation for any programming library or framework, finding code examples for specific APIs or features,…

gpt-image-1-5

Generate and edit images using OpenAI's GPT Image 1.5 model. Use when the user asks to generate, create, edit, modify, change, alter, or update images. Also use when user references an existing image file and asks to modify it in any way (e.g., "modify this…

here-be-git

Initialise a git repository with optional agent commit instructions and .gitignore. Use when users say "here be git", "init git", "initialise git", or otherwise indicate they want to set up version control in the current directory.

markdown-converter

Convert documents and files to Markdown using markitdown. Use when converting PDF, Word (.docx), PowerPoint (.pptx), Excel (.xlsx, .xls), HTML, CSV, JSON, XML, images (with EXIF/OCR), audio (with transcription), ZIP archives, YouTube URLs, or EPubs to…

promptify

Transform user requests into detailed, precise prompts for AI models. Use when users say "promptify", "promptify this", or explicitly request prompt engineering or improvement of their request for better AI responses.

tavily

Use this skill for web search, extraction, mapping, crawling, and research via Tavily’s REST API when web searches are needed and no built-in tool is available, or when Tavily’s LLM-friendly format is beneficial.

upstash-redis-kv

Read and write to Upstash Redis-compatible key-value store via REST API. Use when there is a need to save or retrieve key-value data, use Redis features (caching, counters, lists, sets, hashes, sorted sets, etc.) for the current interaction, or when the user…

youtube-transcript

Extract transcripts from YouTube videos. Use when the user asks for a transcript, subtitles, or captions of a YouTube video and provides a YouTube URL (youtube.com/watch?v=, youtu.be/, or similar). Supports output with or without timestamps.

aeon

This skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection, segmentation, and similarity search. Use when working with temporal data, sequential patterns, or time-indexed…

anndata

Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for…

astropy

Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with astronomical data including celestial coordinates, physical units, FITS files, cosmological calculations, time systems, tables, world coordinate systems…

benchling-integration

Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.

bgpt-paper-search

Search scientific papers and retrieve structured experimental data extracted from full-text studies via the BGPT MCP server. Returns 25+ fields per paper including methods, results, sample sizes, quality scores, and conclusions. Use for literature reviews,…

biopython

Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick…

bioservices

Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID mapping across services. For quick single-database…

cellxgene-census

Query the CELLxGENE Census (61M+ cells) programmatically. Use when you need expression data across tissues, diseases, or cell types from the largest curated single-cell atlas. Best for population-scale queries, reference atlas comparisons. For analyzing your…

cirq

Google quantum computing framework. Use when targeting Google Quantum AI hardware, designing noise-aware circuits, or running quantum characterization experiments. Best for Google hardware, noise modeling, and low-level circuit design. For IBM hardware use…

clinical-decision-support

Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with…

clinical-trials

ClinicalTrials.gov API client and analysis toolkit. Search, filter, and download trial records. Analyze trial designs, endpoints, enrollment, sponsors, and results. Automate systematic trial discovery.

cobrapy

Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis.

dask

Distributed computing for larger-than-RAM pandas/NumPy workflows. Use when you need to scale existing pandas/NumPy code beyond memory or across clusters. Best for parallel file processing, distributed ML, integration with existing pandas code. For out-of-core…

datamol

Pythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug discovery including SMILES parsing, standardization, descriptors, fingerprints, clustering, 3D conformers, parallel processing. Returns native…

dicom-pipeline

End-to-end DICOM workflow: parsing, anonymization/de-identification, conversion, structured reporting, PACS query/retrieve, and DICOMweb. Build automated medical imaging pipelines.

diffusers

HuggingFace Diffusers library for diffusion models: text-to-image, image-to-image, inpainting, super-resolution. Supports Stable Diffusion, Flux, SDXL, and custom pipelines.

dnanexus-integration

DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics pipeline development and execution.

esm

Comprehensive toolkit for protein language models including ESM3 (generative multimodal protein design across sequence, structure, and function) and ESM C (efficient protein embeddings and representations). Use this skill when working with protein sequences,…

etetoolkit

Phylogenetic tree toolkit (ETE). Tree manipulation (Newick/NHX), evolutionary event detection, orthology/paralogy, NCBI taxonomy, visualization (PDF/SVG), for phylogenomics.

exploratory-data-analysis

Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. Automatically detects file…

fhir

FHIR (Fast Healthcare Interoperability Resources) standard. Tools for reading, writing, and querying healthcare data via FHIR APIs: patients, observations, conditions, medications, procedures. Interop with EHR systems.

flowio

Parse FCS (Flow Cytometry Standard) files v2.0-3.1. Extract events as NumPy arrays, read metadata/channels, convert to CSV/DataFrame, for flow cytometry data preprocessing.

fluidsim

Framework for computational fluid dynamics simulations using Python. Use when running fluid dynamics simulations including Navier-Stokes equations (2D/3D), shallow water equations, stratified flows, or when analyzing turbulence, vortex dynamics, or…

generate-image

Generate or edit images using AI models (FLUX, Nano Banana 2). Use for general-purpose image generation including photos, illustrations, artwork, visual assets, concept art, and any image that is not a technical diagram or schematic. For flowcharts, circuits,…

geniml

This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for training region embeddings (Region2Vec, BEDspace), single-cell ATAC-seq analysis (scEmbed), building consensus peaks (universes), or any ML-based…

geopandas

Python library for working with geospatial vector data including shapefiles, GeoJSON, and GeoPackage files. Use when working with geographic data for spatial analysis, geometric operations, coordinate transformations, spatial joins, overlay operations,…

get-available-resources

This skill should be used at the start of any computationally intensive scientific task to detect and report available system resources (CPU cores, GPUs, memory, disk space). It creates a JSON file with resource information and strategic recommendations that…

gget

Fast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST searches, AlphaFold structures, enrichment analysis. Best for interactive exploration, simple queries. For batch processing or advanced BLAST use biopython; for…