Menu
How to parse cBioPortal MAF, SV, CNA, and clinical files for the labeling pipeline.
Install with Codex or Claude Copy this prompt, paste it into Codex, Claude, or another assistant, and let it review the skill page and install it for you.
Based on SOC occupation classification
Testing conventions, patterns, and best practices for kreview. MANDATORY reading before adding or modifying tests.
nbdev cell directives, module export conventions, editing workflow, and testing patterns for notebook-first development. MANDATORY reading before editing any kreview Python module.
5-tier ctDNA labeling hierarchy with IMPACT tissue rescue, CH hotspot filtering, configurable VAF/variant thresholds, and continuous VAF regression stats.
Structured debugging framework for kreview data pipeline issues
DuckDB glob scan patterns, connection management, and performance for kreview
cfDNA fragmentomics biology — what each feature measures and how to interpret it for ctDNA detection.
| name | cbioportal-parsing |
| description | How to parse cBioPortal MAF, SV, CNA, and clinical files for the labeling pipeline. |
## header (skip with comment='#')