omar-A-hassan

Shared operational contract for all MedSci agents: sequential execution, planning phase, retry limits, evidence standards.

Isolated exploratory code execution with medsci-sandbox tools. Use when analysis requires custom code beyond existing domain MCP tools.

AlphaFold DB for predicted protein structures and pLDDT confidence scores

Molecular biology toolkit. Use for FASTA parsing, sequence analysis, and translation.

ChEMBL database access for bioactivity data and target search

Datamol for molecular manipulation, SMILES processing, and cheminformatics

Molecular ML with DeepChem - featurizers, models, and molecular property prediction

ESM protein language models for sequence embeddings and structure prediction

NASA V-Model systems engineering for building and verifying code. Use when implementing a non-trivial feature, building a system, or when asked to apply the "V-model", "systems engineering", "traceability", or rigorous "verify and validate" approach. Drives a task down the left side (define each level plus its paired verification plan), implements at the bottom, then climbs the right side verifying bottom-up and validating against the original intent.