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openscientist
openscientist contains 10 collected skills from openscientist-io, with repository-level occupation coverage and site-owned skill detail pages.
Skills in this repository
Genomics and transcriptomics analysis strategies
Reference of available Phenix commands for structural biology analysis
Interpret statistical results and decide what to do next
Skills for querying the JGI Dremio Lakehouse containing GOLD and IMG genomics databases. Use this when users want to explore JGI databases, query GOLD (Genomes OnLine Database), IMG (Integrated Microbial Genomes), or run SQL queries against JGI genomics data. Triggers on mentions of JGI, GOLD database, IMG database, genome metadata, or JGI lakehouse queries.
Skills for querying the KBase/BERDL Datalake via the MCP REST API. Use this when users want to explore KBase databases, list tables, get schemas, sample data, or run SQL queries against the KBase data lake. Triggers on mentions of KBase, BERDL, or requests to query biological/microbiome data stored in KBase.
Statistical analysis strategies and data exploration techniques
Metabolomics-specific analysis strategies and domain knowledge
Generate testable hypotheses from data patterns and literature
Decide what to investigate next when you have multiple options
Decide when to stop investigating and prepare final report