Ingest a new source into the wiki. Reads the source, summarizes it, creates a wiki/sources/ page, updates affected topic and entity pages, flags contradictions, and logs the activity. Trigger phrases: /brain-ingest, ingest [file or URL], add this source, read and file this, process this article/paper/note.
Redesign the qmd schema for this vault โ analyze the current wiki, recommend a new set of collections and contexts, update scripts/qmd/setup.ts, then tear down and rebuild the index from scratch. Destructive. Trigger phrases: /brain-rebuild, rebuild the brain, restructure qmd, redesign collections, redo contexts, recompute schema.
Refresh the qmd index for this vault โ re-scans all collections for new/changed files and regenerates vector embeddings. Use after a bulk ingest session, after manual file edits, or whenever search feels stale. Trigger phrases: /brain-refresh, refresh the brain, refresh embeddings, re-embed wiki, update qmd index, refresh search index.
Query the wiki to answer a question. Searches semantically, synthesizes an answer with inline citations, and optionally files the answer as a permanent Q&A page. Trigger phrases: /brain-search, what do I know about, search the wiki, find everything about, what does the wiki say about.
Use qmd CLI to manage collections, index documents, search, and query a local semantic knowledge base. Use when the user mentions qmd, searching a collection, indexing files, running queries, hybrid search, BM25, vector search, or managing a document index. Covers: collection add/list/remove/rename, context management, get/multi-get, update, embed, query, search, vsearch, and MCP server commands.
Initialize this claude-second-brain vault. Registers qmd collections and generates vector embeddings. Use when: setting up for the first time, re-registering collections, or re-indexing after a bulk ingest session. Trigger phrases: /setup, setup vault, initialize collections, reindex, register qmd.