Generate publication-quality plots from data files or DataFrames
Analyzes a GitHub repository or local directory to extract structure, files, and research context
Assembles all manuscript sections into a complete manuscript with validation and metadata generation
Analyzes manuscript outline for journal suitability, recommends optimal journal, and fetches author guidelines
Performs adversarial critique of manuscripts, outlines, literature reviews, or other academic content against journal requirements and quality standards.
Analyzes the repository structure and generates a detailed manuscript outline based on target journal guidelines (Nature, PLOS, Bioinformatics).
Performs deep literature research on manuscript topics and generates a comprehensive one-page summary of background and related work with citations.
Use for complete end-to-end manuscript generation. Orchestrates all steps from repository analysis to final manuscript with validation gates, two-stage review, citation verification, and automated revision.