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clinpub-modify

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UpdatedJuly 4, 2026 at 03:45

Modify completed analysis outputs. Clarifies modification scope (figure style, statistical method, variables), executes changes, verifies outputs, and records history in PLAN.md. Can be invoked from any phase. Triggers: modify figures, change analysis method, adjust chart style, replace variables.

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Side-Peng

Side-Peng/clinpub

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Related occupationsSOC

Based on SOC occupation classification

Software DevelopersComputer and Mathematical Occupations·SOC 15-1252

SKILL.md

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name	clinpub-modify
description	Modify completed analysis outputs. Clarifies modification scope (figure style, statistical method, variables), executes changes, verifies outputs, and records history in PLAN.md. Can be invoked from any phase. Triggers: modify figures, change analysis method, adjust chart style, replace variables.

ClinPub Modify

Modify completed Phase 2 analysis outputs. Support two categories:

Style modifications: color, font, chart type, layout adjustments (re-render figures)
Method modifications: statistical test change, variable replacement, parameter adjustment, new method addition (re-run analysis)

Execution Context

Workflow: pipeline/workflows/modify.md
References: pipeline/references/analysis_methods.md, r_patterns.md
Agent: agents/modify-agent.md

Process

Execute the modification workflow from pipeline/workflows/modify.md end-to-end.

Success Criteria

Modification scope defined and user-confirmed
All modifications executed and verified
Modified figures meet publication standards (>=300 DPI, English labels)
Statistical reports include effect size + 95%CI + exact p-value
Modification history appended to PLAN.md
User informed about manuscript update requirement

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name	clinpub-modify
description	Modify completed analysis outputs. Clarifies modification scope (figure style, statistical method, variables), executes changes, verifies outputs, and records history in PLAN.md. Can be invoked from any phase. Triggers: modify figures, change analysis method, adjust chart style, replace variables.

ClinPub Modify

Modify completed Phase 2 analysis outputs. Support two categories:

Style modifications: color, font, chart type, layout adjustments (re-render figures)
Method modifications: statistical test change, variable replacement, parameter adjustment, new method addition (re-run analysis)

Execution Context

Workflow: pipeline/workflows/modify.md
References: pipeline/references/analysis_methods.md, r_patterns.md
Agent: agents/modify-agent.md

Process

Execute the modification workflow from pipeline/workflows/modify.md end-to-end.

Success Criteria

Modification scope defined and user-confirmed
All modifications executed and verified
Modified figures meet publication standards (>=300 DPI, English labels)
Statistical reports include effect size + 95%CI + exact p-value
Modification history appended to PLAN.md
User informed about manuscript update requirement